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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62711397_62711668_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62711397 - 62711668
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACAAG
5'SS Class:
major
3'SS Sequence:
TCTGCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTTTCTGCATC
Flanking Amino Acid:
CPCPMQKKCLRYRYPLEDLP
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
62.3
43.9
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76
0.59
0.9
66.3
39.8
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
57.3
0.21
1.9
74.51
36.5

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191