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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62712162_62713354_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62712162 - 62713354
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCTGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAC
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
EAVNFCTADWLPIGRQCVSH
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.3
65
41.7
Major BPS
58.2
0.2
1
49.5
35.1
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
43.9
-0.7
2.5
51.4
45
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191