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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62713475_62714258_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62713475 - 62714258
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCACTTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCCTCACTT
Flanking Amino Acid:
PNVLMEHGVPVYRTNQCAGE
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.6
0.37
1
66.4
39.2
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
61.9
0.45
1.8
81.17
40.7

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191