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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62714422_62716027_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62714422 - 62716027
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGGCC
5'SS Class:
major
3'SS Sequence:
GTTATTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
GTTATTTTATTA
Flanking Amino Acid:
HWSYSINYLHWGEPKTWYGV
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.1
39.4
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
74.8
0.56
0.9
74.7
39.8
Minor 5ss
36.7
-1.5
3.5
47.2
44
Minor BPS
53.3
0.1
1.6
63.95
36.9

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191