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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62717900_62719029_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62717900 - 62719029
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
CATACCCTAACT
Flanking Amino Acid:
KSDYFNMPVHMVPTELVEKE
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
78.3
32.5
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
40.7
-1
2.9
51.8
38.6
Minor BPS
63.6
0.5
1.8
79.11
42.3

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191