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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62723969_62724510_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62723969 - 62724510
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
ATTTTACTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTACTTAAAG
Flanking Amino Acid:
GLALGAKDKEDEVTRRRKGT
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.1
35
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73
0.52
1.1
72.6
36.4
Minor 5ss
34.7
-1.7
2.6
34.1
41.5
Minor BPS
71.8
0.55
1.7
78.16
38.1

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191