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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62729914_62730728_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62729914 - 62730728
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACAC
5'SS Class:
major
3'SS Sequence:
TCTGATCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTGCTCTGATC
Flanking Amino Acid:
ELFQSGVSLMGIQKPNLDLK
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.9
36.2
Major BPS
79
0.72
1
69
38.9
Major PPT
71.9
0.49
0.9
62.8
39.4
Minor 5ss
27
-2.6
2.9
30.6
36.6
Minor BPS
49.2
-0
1.7
62.63
37.4

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191