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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62732950_62734713_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62732950 - 62734713
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
GTTTCTTTACGC
Flanking Amino Acid:
TGICKIRPPKDWQPPFACEV
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
74
0.6
1
65.6
41.1
Major PPT
82.7
0.73
0.7
81
31
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
57.6
0.22
1.9
70.5
41.3

Associated Gene:

Gene:
KDM5A
Ensembl Gene ID:
ENSAPLG00000000585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001099
62689503 - 62736693
47191