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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62743685_62744976_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62743685 - 62744976
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGAAA
5'SS Class:
major
3'SS Sequence:
TCTCTTTACCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCTCTTTACCT
Flanking Amino Acid:
ERYKETYDEQHKLQWEVRQR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
76
34.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
75
0.56
0.8
69.5
35.8
Minor 5ss
27.9
-2.5
2.8
31.2
42.5
Minor BPS
73.1
0.8
1.6
87.23
39

Associated Gene:

Gene:
CCDC77
Ensembl Gene ID:
ENSAPLG00000002644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034000
62741694 - 62791181
49488
ENSAPLT00000002675
62741694 - 62752903
11210