Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62745120_62746091_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62745120 - 62746091

Intron Length:

972

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTGAATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTTCTTTGAATT

Flanking Amino Acid:

LYSENDRLKIRELEDRKKIQ

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

70.5

41.4

Major BPS

73.1

0.58

79.6

29.1

Major PPT

72.7

0.51

0.9

63.5

41.9

Minor 5ss

38.5

-1.3

2.9

47.2

Minor BPS

65.5

0.57

1.3

81.72

33.6

Associated Gene:

Gene:

CCDC77

Ensembl Gene ID:

ENSAPLG00000002644

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034000

62741694 - 62791181

49488

ENSAPLT00000002675

62741694 - 62752903

11210