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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6274926_6279145_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6274926 - 6279145
Intron Length:
4220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCCTCCAACT
Flanking Amino Acid:
EKPDISLLQTGNLFDTTTDA
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.6
81.6
30.5
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
58
0.33
1.9
82.83
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003872
6274864 - 6318803
43940