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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62750954_62752756_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62750954 - 62752756
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTATTAATC
Flanking Amino Acid:
LKDVEKQLFKVTLILGPDQD
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.3
0.75
0.7
81.5
30.4
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
63.2
0.39
1.7
74.76
36.2

Associated Gene:

Gene:
CCDC77
Ensembl Gene ID:
ENSAPLG00000002644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002675
62741694 - 62752903
11210