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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62784734_62785399_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
62784734 - 62785399
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTTACTTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80.4
0.68
0.9
77.1
35.8
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
68.8
0.67
1.2
80.36
35.5

Associated Gene:

Gene:
CCDC77
Ensembl Gene ID:
ENSAPLG00000002644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034000
62741694 - 62791181
49488
Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609