About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62792214_62792548_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
62792214 - 62792548
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
TGTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.4
0.71
0.8
75.9
32.7
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609