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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62795371_62795787_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62795371 - 62795787
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
TGCTTGCCAACC
Flanking Amino Acid:
KPDPRDTLYKVPLLSKSRLR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
88.6
0.87
0.6
88
21.9
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
41.7
-0.6
2.4
55.52
42.7

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609