About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62795898_62796236_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62795898 - 62796236
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTGCTTTATCT
Flanking Amino Acid:
PLQRYQGLQFVHLSFVYPND
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
87.1
0.83
0.7
80.3
31.7
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
69.7
0.7
1.7
87.39
38.7

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609