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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62796338_62797655_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62796338 - 62797655
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGATCAGACT
Flanking Amino Acid:
FYQENPYYLERFGFYKYMKM
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
84
0.85
0.9
75
39.9
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
43.3
-0.4
2.2
68.41
42.8

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609