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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62801014_62801262_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
62801014 - 62801262
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GCGATACAACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAG
U12 Branch Point Sequence:
TGCGATACAACC
Flanking Amino Acid:
HRAVVHFVVPVKNQARWVLQ
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
49.1
-0
1.5
57.8
39
Major PPT
50.9
0.02
1.1
41.4
42.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
40.9
-0.7
1.9
49.11
40.8

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609