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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62801417_62802128_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62801417 - 62802128
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CCTGTCTGACCC
Flanking Amino Acid:
EKALKRSSLHSYRYLKLTGN
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
65.6
0.35
0.9
55
40.5
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
46.1
-0.3
1.8
53.77
44.5

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609