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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62803468_62804221_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62803468 - 62804221
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAA
U12 Branch Point Sequence:
TTTCCCTGCATT
Flanking Amino Acid:
WGGEDWELLDRILQAGLEVE
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
66.5
0.41
1.1
68.2
37.5
Major PPT
75.6
0.58
0.9
72.9
32
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
59.1
0.37
1.9
82.5
38.8

Associated Gene:

Gene:
B4GALNT3
Ensembl Gene ID:
ENSAPLG00000002782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002843
62784722 - 62804330
19609