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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6287104_6291179_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6287104 - 6291179
Intron Length:
4076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
LDQNIVGAIKVFTEKYCTAN
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.4
22.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003872
6274864 - 6318803
43940