Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6291406_6296180_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6291406 - 6296180

Intron Length:

4775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTTGGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATTAAAA

Flanking Amino Acid:

GIILESTSSDPEVQLAEGFD

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.1

24.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.8

0.63

0.9

76.5

32.1

Minor 5ss

44.3

-0.6

2.9

62.8

Minor BPS

62.8

0.4

1.9

79.52

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003779

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003872

6274864 - 6318803

43940