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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62945345_62946422_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62945345 - 62946422
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTAATTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
QFQQPSISILSDGTVDSGQG
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
70.9
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.7
0.74
0.9
77.6
36.4
Minor 5ss
38.9
-1.3
3.4
55.1
43.4
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073