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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62956184_62957244_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62956184 - 62957244
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTTTCTTTACCT
Flanking Amino Acid:
PMPQAAAGTQLPVSQPVSII
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
78.3
0.64
0.8
70
36.4
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
79.9
1.02
1.5
95.57
31.2

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000028879
62884653 - 62987725
103073