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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62959041_62959723_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62959041 - 62959723
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GAGTTCTTGATG
Flanking Amino Acid:
SASSQQAVVEGTQGVSQTAP
Intron Amino Acid Position:
1050

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78
0.63
0.7
73.6
30.3
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
57.9
0.1
1.4
55.14
40.6

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073