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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62960524_62961085_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62960524 - 62961085
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAATT
Flanking Amino Acid:
TARPKLRILNVSNKGDRVVE
Intron Amino Acid Position:
1135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
83.4
28
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.8
71.7
33.8
Minor 5ss
35.6
-1.6
3.5
53.7
43.8
Minor BPS
68.4
0.66
1.6
84.17
37

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035329
62884653 - 62987725
103073
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073