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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62964400_62964560_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62964400 - 62964560
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAA
U12 Branch Point Sequence:
TATCACTGAATA
Flanking Amino Acid:
DPTSSMPQRIGVPPSSFTQV
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
60.3
0.26
1.2
70.7
35.5
Major PPT
81.1
0.7
0.8
81
31
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
57
0.22
1.6
68.65
36.9

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073