About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6296447_6298865_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6296447 - 6298865
Intron Length:
2419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCTATAAAT
Flanking Amino Acid:
TMRKLMQIQAVGTQNRQQPP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.7
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
90.1
0.9
0.7
89.7
25.6
Minor 5ss
38.3
-1.3
2.9
49.3
46.5
Minor BPS
63.8
0.51
1.7
82.18
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003872
6274864 - 6318803
43940