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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62966485_62970534_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62966485 - 62970534
Intron Length:
4050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCCTCTTCATCT
Flanking Amino Acid:
PSKPPLSRVPVLPVGSELPA
Intron Amino Acid Position:
1772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.1
32.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.1
0.56
0.8
73.8
29.7
Minor 5ss
35.6
-1.6
3.1
50.4
45.6
Minor BPS
53.7
0.19
1.8
71.47
45.8

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073