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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62974403_62975091_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62974403 - 62975091
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
CTTGAACTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
TVPVTSAPACSVPSVASTTV
Intron Amino Acid Position:
1829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
62.8
44.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.2
0.45
0.9
63
38.3
Minor 5ss
44.7
-0.6
3
58.3
46.2
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073