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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62975162_62976650_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62975162 - 62976650
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAATA
Flanking Amino Acid:
VSTAAQSLKEASASCGGESS
Intron Amino Acid Position:
1852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
83.4
0.75
0.6
83.8
24.4
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
67.2
0.54
1.5
74.85
37.3

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035329
62884653 - 62987725
103073
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073