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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62976731_62977242_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62976731 - 62977242
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGAT
5'SS Class:
major
3'SS Sequence:
ATTTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
TGTGTGATGACA
Flanking Amino Acid:
AGVLKMGRFQVSVAVDDVLK
Intron Amino Acid Position:
1879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
71.2
34.6
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
78
0.63
0.9
70.2
40.7
Minor 5ss
25.3
-2.8
3.5
37
47.6
Minor BPS
43.4
-0.5
2.3
59.31
40.6

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073