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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62979029_62979890_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62979029 - 62979890
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AAATATTCAAGT
Flanking Amino Acid:
SQGNKSPQLSGNLSAQSAPS
Intron Amino Acid Position:
2166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79
0.65
0.8
73.5
31.7
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
46.1
-0.2
1.9
61.95
41.5

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028879
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073
ENSAPLT00000024013
62884653 - 62987725
103073
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000003229
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073