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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62980086_62981335_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62980086 - 62981335
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTTTTCTCACA
Flanking Amino Acid:
SVPSLSAPGQGCAKFNCASE
Intron Amino Acid Position:
2073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.1
0.79
0.8
80.1
32
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
49.1
-0
2
68.01
38.6

Associated Gene:

Gene:
WNK1
Ensembl Gene ID:
ENSAPLG00000003146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038719
62884653 - 62987725
103073
ENSAPLT00000035774
62884653 - 62987725
103073
ENSAPLT00000035329
62884653 - 62987725
103073
ENSAPLT00000044101
62884653 - 62987725
103073