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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6298989_6305153_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6298989 - 6305153
Intron Length:
6165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATCT
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACGTATTT
Flanking Amino Acid:
QNQTRAVTSNGEIPIVNSSI
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.6
35.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
86.3
0.82
0.7
84.1
23.9
Minor 5ss
46.8
-0.3
2.8
62.8
42.8
Minor BPS
44.2
-0.3
2.3
66
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003872
6274864 - 6318803
43940