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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62993207_62993500_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62993207 - 62993500
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTATCT
Flanking Amino Acid:
NSHCADQHTPEPSPHRRSQS
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.4
0.59
0.8
70.5
33.7
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
49.9
0.07
2.2
78
43.9

Associated Gene:

Gene:
RAD52
Ensembl Gene ID:
ENSAPLG00000006671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006935
62993148 - 63005888
12741
ENSAPLT00000030791
62993148 - 63005888
12741