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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62993747_62994279_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62993747 - 62994279
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAA
5'SS Class:
major
3'SS Sequence:
TCATTCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATT
Flanking Amino Acid:
ELAIEEDFFADDPELWDISL
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
65
42.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.9
0.56
0.9
67
39
Minor 5ss
32.6
-2
2.9
38.9
46.2
Minor BPS
65.8
0.58
2
89.07
35.8

Associated Gene:

Gene:
RAD52
Ensembl Gene ID:
ENSAPLG00000006671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030791
62993148 - 63005888
12741
ENSAPLT00000006935
62993148 - 63005888
12741