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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_62999111_63000427_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62999111 - 63000427
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTTCTATTATT
Flanking Amino Acid:
WAHSVTQQNVDFVDLNNGRF
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
60.6
0.42
1.9
84.75
35.7

Associated Gene:

Gene:
RAD52
Ensembl Gene ID:
ENSAPLG00000006671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030791
62993148 - 63005888
12741
ENSAPLT00000006935
62993148 - 63005888
12741