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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63000522_63001056_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63000522 - 63001056
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATGTATATAT
Flanking Amino Acid:
SSRQAGGGQKVCYIEGHKVI
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
41.7
-0.5
2.1
61.4
42.2

Associated Gene:

Gene:
RAD52
Ensembl Gene ID:
ENSAPLG00000006671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030791
62993148 - 63005888
12741
ENSAPLT00000006935
62993148 - 63005888
12741