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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63001159_63002455_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63001159 - 63002455
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCATCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATC
Flanking Amino Acid:
TSNSVAHFGQCQYTASEYQA
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
35
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.46
1.1
69
41.4
Minor 5ss
36.9
-1.5
2.7
45.6
42.5
Minor BPS
53.4
0.09
1.8
68.66
38.1

Associated Gene:

Gene:
RAD52
Ensembl Gene ID:
ENSAPLG00000006671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030791
62993148 - 63005888
12741
ENSAPLT00000006935
62993148 - 63005888
12741