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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63004180_63005760_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63004180 - 63005760
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
69.2
0.69
1.7
85.82
34.8

Associated Gene:

Gene:
RAD52
Ensembl Gene ID:
ENSAPLG00000006671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030791
62993148 - 63005888
12741