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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63102176_63122263_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63102176 - 63122263
Intron Length:
20088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCTTAAAAT
Flanking Amino Acid:
ERKVNVLQKKIENLQEQLRD
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.2
0.72
0.9
87.2
23.8
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
70
0.71
1.7
88.96
35.8

Associated Gene:

Gene:
ERC1
Ensembl Gene ID:
ENSAPLG00000006100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032879
63017236 - 63200575
183340
ENSAPLT00000006374
63017236 - 63200575
183340