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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63138546_63166724_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63138546 - 63166724
Intron Length:
28179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
DKDKKIAELERQVKDQNKKV
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
ERC1
Ensembl Gene ID:
ENSAPLG00000006100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032879
63017236 - 63200575
183340
ENSAPLT00000006374
63017236 - 63200575
183340