About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6314834_6318742_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6314834 - 6318742
Intron Length:
3909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTATCG
Flanking Amino Acid:
KSQSFKLINQDYHHEIYKIS
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
89.7
0.89
0.7
82.2
34.1
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
67.6
0.42
1.6
74.38
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003779
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003872
6274864 - 6318803
43940