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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63166861_63186090_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63166861 - 63186090
Intron Length:
19230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
CGTCATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCTTCACCT
Flanking Amino Acid:
NLNDSSQQLQDNLRKKDDRI
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
78.2
0.63
0.9
68.8
41.7
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
60.2
0.4
1.9
79.65
42.8

Associated Gene:

Gene:
ERC1
Ensembl Gene ID:
ENSAPLG00000006100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006374
63017236 - 63200575
183340
ENSAPLT00000032879
63017236 - 63200575
183340