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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6332278_6332403_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6332278 - 6332403
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAC
5'SS Class:
major
3'SS Sequence:
TGTTATACATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTGTTCAATC
Flanking Amino Acid:
EAYFQRCGYKPVNEKPPGEV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
64.6
35.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
66.3
0.37
1
65.1
40.8
Minor 5ss
43.2
-0.7
3.1
58.4
46.5
Minor BPS
51.3
0.02
2
65.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046945
6330642 - 6347588
16947