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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6336526_6337774_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6336526 - 6337774
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
IEILAPEVNKGLRNDLKAAL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.1
0.86
0.8
80.9
36.4
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046945
6330642 - 6347588
16947
ENSAPLT00000041047
6330642 - 6347588
16947
ENSAPLT00000003486
6321811 - 6347588
25778