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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63376705_63377353_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63376705 - 63377353
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGGAC
U12 Branch Point Sequence:
CCCCGTTGGACG
Flanking Amino Acid:
TSPVADASSWWSLAMNPIQR
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
47.5
-0.1
1.5
48.8
46.3
Major PPT
81.7
0.71
0.7
76.6
25.3
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
39.7
-0.9
1.8
35.67
40.3

Associated Gene:

Gene:
WNT5B
Ensembl Gene ID:
ENSAPLG00000005794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006011
63324594 - 63391883
67290