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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_63377602_63383344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63377602 - 63383344
Intron Length:
5743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
TGTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTGTTGTTAATT
Flanking Amino Acid:
TSVFGRVMKIGSRETAFTYA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80
0.68
0.8
73.8
31.3
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
57.2
0.31
2.1
74.52
43.3

Associated Gene:

Gene:
WNT5B
Ensembl Gene ID:
ENSAPLG00000005794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006011
63324594 - 63391883
67290