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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6337922_6339836_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6337922 - 6339836
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CAGTGTGGAAAT
Flanking Amino Acid:
EENTTIEELEALGESLGRGD
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
71.6
0.54
1
72
33.1
Major PPT
76.6
0.6
0.8
69
37
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
37.2
-0.8
2.3
50.53
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046945
6330642 - 6347588
16947
ENSAPLT00000041047
6330642 - 6347588
16947
ENSAPLT00000003486
6321811 - 6347588
25778